bioscala 0.1 API
bio

class GappedConvert
[source: bio/GappedConvert.scala]
class GappedConvert[T](Gap : T, base : StringConverter[T])
extends StringConverter[T]
A gap represents a gap in a GappedSequence, as used in an alignment. Gaps can contain state - e.g. quality - through the attributes list.
Direct Known Subclasses:
GappedConvert, IUPACGappedConvert, GappedConvert, IUPACGappedConvert, GappedConvert, IUPACGappedConvert
Method Summary
def fromChar (c : Char) : T
Create a Gap object from its character representation.
def fromItem (i : T) : T
Create an object from an object - fails on Tnknown type
Methods inherited from StringConverter
fromString, fromList
Methods inherited from AnyRef
getClass, hashCode, equals, clone, toString, notify, notifyAll, wait, wait, wait, finalize, ==, !=, eq, ne, synchronized
Methods inherited from Any
==, !=, isInstanceOf, asInstanceOf
Method Details
def fromChar(c : Char) : T
Create a Gap object from its character representation.
Overrides
StringConverter.fromChar
def fromItem(i : T) : T
Create an object from an object - fails on Tnknown type
Overrides
StringConverter.fromItem
bioscala 0.1 API